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Posting questions and answers timeout

We get long page load wait times that lead to timeouts on posting questions, comments, and answers. I'm assuming this is an issue with the sql queries.

We're using MySQL 5.5, and none of our other databases on that server seem to be having issues. I've noticed that even on this site the wait times are long (but no timeouts obviously), so again, I'm assuming there's something going on with the queries.

I upped our logging to DEBUG to see if we could get anything, and all we got was a "connection timeout" that was logged.